# This file was produced by bcftools stats (1.24+htslib-1.24) and can be plotted using plot-vcfstats.
# The command line was:	bcftools stats  work/filtered.vcf.gz
#
# Definition of sets:
# ID	[2]id	[3]tab-separated file names
ID	0	work/filtered.vcf.gz
# SN, Summary numbers:
#   number of records   .. number of data rows in the VCF
#   number of no-ALTs   .. reference-only sites, ALT is either "." or identical to REF
#   number of SNPs      .. number of rows with a SNP
#   number of MNPs      .. number of rows with a MNP, such as CC>TT
#   number of indels    .. number of rows with an indel
#   number of others    .. number of rows with other type, for example a symbolic allele or
#                          a complex substitution, such as ACT>TCGA
#   number of multiallelic sites     .. number of rows with multiple alternate alleles
#   number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs
# 
#   Note that rows containing multiple types will be counted multiple times, in each
#   counter. For example, a row with a SNP and an indel increments both the SNP and
#   the indel counter.
# 
# SN	[2]id	[3]key	[4]value
SN	0	number of samples:	1
SN	0	number of records:	789
SN	0	number of no-ALTs:	0
SN	0	number of SNPs:	683
SN	0	number of MNPs:	0
SN	0	number of indels:	106
SN	0	number of others:	0
SN	0	number of multiallelic sites:	0
SN	0	number of multiallelic SNP sites:	0
# TSTV, transitions/transversions
#   - transitions, see https://en.wikipedia.org/wiki/Transition_(genetics)
#   - transversions, see https://en.wikipedia.org/wiki/Transversion
# TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
TSTV	0	626	57	10.98	626	57	10.98
# SiS, Singleton stats:
#   - allele count, i.e. the number of singleton genotypes (AC=1)
#   - number of transitions, see above
#   - number of transversions, see above
#   - repeat-consistent, inconsistent and n/a: experimental and useless stats [DEPRECATED]
# SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
SiS	0	1	683	626	57	106	0	0	106
# AF, Stats by non-reference allele frequency:
# AF	[2]id	[3]allele frequency	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
AF	0	0.000000	683	626	57	106	0	0	106
# QUAL, Stats by quality
# QUAL	[2]id	[3]Quality	[4]number of SNPs	[5]number of transitions (1st ALT)	[6]number of transversions (1st ALT)	[7]number of indels
QUAL	0	36.4	1	1	0	0
QUAL	0	54.3	1	1	0	0
QUAL	0	56.5	0	0	0	1
QUAL	0	66.8	0	0	0	1
QUAL	0	72.7	0	0	0	1
QUAL	0	88.0	1	0	1	0
QUAL	0	98.9	0	0	0	1
QUAL	0	99.0	0	0	0	1
QUAL	0	101.0	0	0	0	1
QUAL	0	104.9	1	1	0	0
QUAL	0	124.8	1	0	1	0
QUAL	0	125.0	1	1	0	0
QUAL	0	125.8	1	0	1	0
QUAL	0	126.0	0	0	0	1
QUAL	0	133.4	1	0	1	0
QUAL	0	136.1	1	1	0	0
QUAL	0	142.4	1	0	1	0
QUAL	0	150.3	0	0	0	1
QUAL	0	155.4	1	1	0	0
QUAL	0	164.4	1	1	0	0
QUAL	0	167.2	1	1	0	0
QUAL	0	167.4	1	0	1	0
QUAL	0	177.4	1	1	0	0
QUAL	0	184.3	1	1	0	0
QUAL	0	192.4	1	1	0	0
QUAL	0	198.9	0	0	0	1
QUAL	0	206.1	0	0	0	1
QUAL	0	225.4	609	569	40	3
QUAL	0	227.8	1	0	1	0
QUAL	0	228.1	2	1	1	2
QUAL	0	228.2	5	3	2	3
QUAL	0	228.3	13	12	1	64
QUAL	0	228.4	36	30	6	24
# IDD, InDel distribution:
# IDD	[2]id	[3]length (deletions negative)	[4]number of sites	[5]number of genotypes	[6]mean VAF
IDD	0	-6	1	0	.
IDD	0	-3	2	0	.
IDD	0	-2	4	0	.
IDD	0	-1	34	0	.
IDD	0	1	57	0	.
IDD	0	2	5	0	.
IDD	0	3	3	0	.
# ST, Substitution types:
# ST	[2]id	[3]type	[4]count
ST	0	A>C	8
ST	0	A>G	140
ST	0	A>T	4
ST	0	C>A	11
ST	0	C>G	6
ST	0	C>T	179
ST	0	G>A	190
ST	0	G>C	6
ST	0	G>T	13
ST	0	T>A	5
ST	0	T>C	117
ST	0	T>G	4
# DP, depth:
#   - set id, see above
#   - the depth bin, corresponds to the depth (unless --depth was given)
#   - number of genotypes with this depth (zero unless -s/-S was given)
#   - fraction of genotypes with this depth (zero unless -s/-S was given)
#   - number of sites with this depth
#   - fraction of sites with this depth
# DP, Depth distribution
# DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)
DP	0	13	0	0.000000	1	0.126743
DP	0	23	0	0.000000	1	0.126743
DP	0	25	0	0.000000	1	0.126743
DP	0	26	0	0.000000	1	0.126743
DP	0	31	0	0.000000	2	0.253485
DP	0	33	0	0.000000	1	0.126743
DP	0	35	0	0.000000	3	0.380228
DP	0	36	0	0.000000	1	0.126743
DP	0	37	0	0.000000	1	0.126743
DP	0	40	0	0.000000	1	0.126743
DP	0	42	0	0.000000	2	0.253485
DP	0	43	0	0.000000	1	0.126743
DP	0	46	0	0.000000	1	0.126743
DP	0	47	0	0.000000	1	0.126743
DP	0	52	0	0.000000	1	0.126743
DP	0	53	0	0.000000	1	0.126743
DP	0	54	0	0.000000	1	0.126743
DP	0	56	0	0.000000	1	0.126743
DP	0	59	0	0.000000	2	0.253485
DP	0	64	0	0.000000	2	0.253485
DP	0	65	0	0.000000	1	0.126743
DP	0	66	0	0.000000	1	0.126743
DP	0	67	0	0.000000	1	0.126743
DP	0	69	0	0.000000	1	0.126743
DP	0	70	0	0.000000	1	0.126743
DP	0	73	0	0.000000	4	0.506971
DP	0	74	0	0.000000	1	0.126743
DP	0	75	0	0.000000	1	0.126743
DP	0	76	0	0.000000	4	0.506971
DP	0	77	0	0.000000	3	0.380228
DP	0	78	0	0.000000	1	0.126743
DP	0	81	0	0.000000	2	0.253485
DP	0	83	0	0.000000	2	0.253485
DP	0	85	0	0.000000	3	0.380228
DP	0	86	0	0.000000	2	0.253485
DP	0	87	0	0.000000	3	0.380228
DP	0	88	0	0.000000	5	0.633714
DP	0	89	0	0.000000	3	0.380228
DP	0	90	0	0.000000	3	0.380228
DP	0	91	0	0.000000	3	0.380228
DP	0	92	0	0.000000	1	0.126743
DP	0	93	0	0.000000	4	0.506971
DP	0	94	0	0.000000	2	0.253485
DP	0	95	0	0.000000	2	0.253485
DP	0	96	0	0.000000	1	0.126743
DP	0	97	0	0.000000	3	0.380228
DP	0	99	0	0.000000	1	0.126743
DP	0	100	0	0.000000	2	0.253485
DP	0	101	0	0.000000	2	0.253485
DP	0	102	0	0.000000	5	0.633714
DP	0	103	0	0.000000	3	0.380228
DP	0	104	0	0.000000	2	0.253485
DP	0	105	0	0.000000	6	0.760456
DP	0	106	0	0.000000	5	0.633714
DP	0	107	0	0.000000	6	0.760456
DP	0	108	0	0.000000	8	1.013942
DP	0	109	0	0.000000	6	0.760456
DP	0	110	0	0.000000	4	0.506971
DP	0	111	0	0.000000	5	0.633714
DP	0	112	0	0.000000	2	0.253485
DP	0	113	0	0.000000	3	0.380228
DP	0	114	0	0.000000	12	1.520913
DP	0	115	0	0.000000	5	0.633714
DP	0	116	0	0.000000	4	0.506971
DP	0	117	0	0.000000	6	0.760456
DP	0	118	0	0.000000	6	0.760456
DP	0	119	0	0.000000	9	1.140684
DP	0	120	0	0.000000	5	0.633714
DP	0	121	0	0.000000	10	1.267427
DP	0	122	0	0.000000	4	0.506971
DP	0	123	0	0.000000	12	1.520913
DP	0	124	0	0.000000	6	0.760456
DP	0	125	0	0.000000	12	1.520913
DP	0	126	0	0.000000	9	1.140684
DP	0	127	0	0.000000	11	1.394170
DP	0	128	0	0.000000	5	0.633714
DP	0	129	0	0.000000	5	0.633714
DP	0	130	0	0.000000	15	1.901141
DP	0	131	0	0.000000	5	0.633714
DP	0	132	0	0.000000	9	1.140684
DP	0	133	0	0.000000	6	0.760456
DP	0	134	0	0.000000	5	0.633714
DP	0	135	0	0.000000	5	0.633714
DP	0	136	0	0.000000	4	0.506971
DP	0	137	0	0.000000	7	0.887199
DP	0	138	0	0.000000	8	1.013942
DP	0	139	0	0.000000	8	1.013942
DP	0	140	0	0.000000	8	1.013942
DP	0	141	0	0.000000	10	1.267427
DP	0	142	0	0.000000	11	1.394170
DP	0	143	0	0.000000	7	0.887199
DP	0	144	0	0.000000	14	1.774398
DP	0	145	0	0.000000	12	1.520913
DP	0	146	0	0.000000	9	1.140684
DP	0	147	0	0.000000	9	1.140684
DP	0	148	0	0.000000	8	1.013942
DP	0	149	0	0.000000	9	1.140684
DP	0	150	0	0.000000	3	0.380228
DP	0	151	0	0.000000	7	0.887199
DP	0	152	0	0.000000	10	1.267427
DP	0	153	0	0.000000	14	1.774398
DP	0	154	0	0.000000	12	1.520913
DP	0	155	0	0.000000	5	0.633714
DP	0	156	0	0.000000	11	1.394170
DP	0	157	0	0.000000	7	0.887199
DP	0	158	0	0.000000	13	1.647655
DP	0	159	0	0.000000	7	0.887199
DP	0	160	0	0.000000	4	0.506971
DP	0	161	0	0.000000	9	1.140684
DP	0	162	0	0.000000	5	0.633714
DP	0	163	0	0.000000	4	0.506971
DP	0	164	0	0.000000	10	1.267427
DP	0	165	0	0.000000	11	1.394170
DP	0	166	0	0.000000	7	0.887199
DP	0	167	0	0.000000	13	1.647655
DP	0	168	0	0.000000	10	1.267427
DP	0	169	0	0.000000	10	1.267427
DP	0	170	0	0.000000	7	0.887199
DP	0	171	0	0.000000	5	0.633714
DP	0	172	0	0.000000	5	0.633714
DP	0	173	0	0.000000	4	0.506971
DP	0	174	0	0.000000	5	0.633714
DP	0	175	0	0.000000	4	0.506971
DP	0	176	0	0.000000	4	0.506971
DP	0	177	0	0.000000	7	0.887199
DP	0	178	0	0.000000	5	0.633714
DP	0	179	0	0.000000	6	0.760456
DP	0	180	0	0.000000	7	0.887199
DP	0	181	0	0.000000	5	0.633714
DP	0	182	0	0.000000	5	0.633714
DP	0	183	0	0.000000	3	0.380228
DP	0	184	0	0.000000	7	0.887199
DP	0	185	0	0.000000	5	0.633714
DP	0	186	0	0.000000	3	0.380228
DP	0	187	0	0.000000	3	0.380228
DP	0	188	0	0.000000	3	0.380228
DP	0	189	0	0.000000	2	0.253485
DP	0	190	0	0.000000	5	0.633714
DP	0	191	0	0.000000	2	0.253485
DP	0	193	0	0.000000	3	0.380228
DP	0	194	0	0.000000	3	0.380228
DP	0	195	0	0.000000	6	0.760456
DP	0	196	0	0.000000	4	0.506971
DP	0	197	0	0.000000	3	0.380228
DP	0	198	0	0.000000	4	0.506971
DP	0	199	0	0.000000	1	0.126743
DP	0	200	0	0.000000	3	0.380228
DP	0	201	0	0.000000	3	0.380228
DP	0	202	0	0.000000	1	0.126743
DP	0	204	0	0.000000	4	0.506971
DP	0	205	0	0.000000	3	0.380228
DP	0	206	0	0.000000	1	0.126743
DP	0	207	0	0.000000	2	0.253485
DP	0	208	0	0.000000	2	0.253485
DP	0	209	0	0.000000	3	0.380228
DP	0	210	0	0.000000	1	0.126743
DP	0	212	0	0.000000	1	0.126743
DP	0	215	0	0.000000	2	0.253485
DP	0	217	0	0.000000	1	0.126743
DP	0	218	0	0.000000	1	0.126743
DP	0	220	0	0.000000	2	0.253485
DP	0	224	0	0.000000	2	0.253485
DP	0	226	0	0.000000	2	0.253485
DP	0	227	0	0.000000	1	0.126743
DP	0	229	0	0.000000	1	0.126743
DP	0	230	0	0.000000	4	0.506971
DP	0	232	0	0.000000	1	0.126743
DP	0	234	0	0.000000	1	0.126743
DP	0	235	0	0.000000	3	0.380228
DP	0	238	0	0.000000	1	0.126743
DP	0	240	0	0.000000	1	0.126743
DP	0	242	0	0.000000	1	0.126743
DP	0	244	0	0.000000	1	0.126743
DP	0	245	0	0.000000	1	0.126743
DP	0	246	0	0.000000	1	0.126743
DP	0	247	0	0.000000	2	0.253485
DP	0	249	0	0.000000	1	0.126743
DP	0	250	0	0.000000	3	0.380228
