For DIA / DDA / TMT quantitative proteomics, phospho- and other PTM datasets, and targeted or untargeted LC-MS / GC-MS metabolomics. We start from quantification matrices, or from raw spectra if searching is needed.
| You provide | You receive |
|---|---|
| Raw spectra or quantification matrix | QC report and normalised quantification matrix |
| Sample sheet: groups, batches | Differential and enrichment tables with publication-ready figures |
| Platform and search settings if available | Network files (Cytoscape-ready) |
Typical turnaround: 7–12 working days for the standard scope; complex designs as stated in the written analysis plan. Quotes are per project, returned within 1 working day.
No public example is available for this analysis yet. Deliverables follow the same structure as our sample reports (report, figures, tables, code, methods text); the specific figures are listed in the written plan.
By type: random missingness is imputed; values below detection use a minimum-value approach. The report states the choice and its effect.
We report identification levels (standard match, library match, formula only) for every metabolite.
Two or more omics layers from the same samples used to answer one question: transcriptome + proteome, transcriptome + metabolome, genome + transcriptome, microbiome + metabolome, single-cell + spatial. The question comes first, then the integration method.
| You provide | You receive |
|---|---|
| Raw data or completed results for each layer | Integration report with joint figures (PDF/SVG/PNG) |
| Sample mapping table across layers | Key molecule and pathway tables |
| The core question | Network files and analysis code |
Typical turnaround: 15–25 working days for the standard scope; complex designs as stated in the written analysis plan. Quotes are per project, returned within 1 working day.
No public example is available for this analysis yet. Deliverables follow the same structure as our sample reports (report, figures, tables, code, methods text); the specific figures are listed in the written plan.
We integrate the overlapping samples and use the rest for single-layer analysis; the plan states the approach.
Yes. Send the result tables and the sample mapping.
Results without new experiments: validate a hypothesis, shortlist candidate genes, add evidence a reviewer asked for, or produce preliminary data for a grant.
| You provide | You receive |
|---|---|
| The research question, target genes or pathways | Dataset list with inclusion rationale |
| Known candidate dataset accessions (optional) | Publication-ready figures and result tables |
| Your own data for validation (optional) | Code and a reproducible workflow |
Typical turnaround: 5–10 working days for the standard scope; complex designs as stated in the written analysis plan. Quotes are per project, returned within 1 working day.
No public example is available for this analysis yet. Deliverables follow the same structure as our sample reports (report, figures, tables, code, methods text); the specific figures are listed in the written plan.
They can form part of a paper, but reviewers usually ask for experimental validation; the report points out which conclusions need it.
At the plan stage we list candidate datasets with sample size, platform and clinical information for you to confirm before analysis.
For needs a standard pipeline does not cover: analyses and figures a reviewer asked for, re-plotting existing results, re-analysis across platforms, or a specific analysis designed around your idea.
| You provide | You receive |
|---|---|
| Reviewer comments or a description of the need | Supplementary analyses and figures mapped to each comment |
| Existing data, results and figures | Response material organised to your needs |
| Original methods and parameters if available | Code and methods description |
Typical turnaround: 3–10 working days for the standard scope; complex designs as stated in the written analysis plan. Quotes are per project, returned within 1 working day.
No public example is available for this analysis yet. Deliverables follow the same structure as our sample reports (report, figures, tables, code, methods text); the specific figures are listed in the written plan.
Yes. Describe the data and the requirement and we quote per project.
Tell us the journal deadline; the plan states the delivery date, and if it cannot be met we say so before quoting.
Tell us the data type and the question you want answered. You will receive a written analysis plan and quote within 1 working day.
Request an analysis plan