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Custom bioinformatics analysis

Bioinformatics analysis built around your research question

Send us sequencing data you already have, from any provider or public repository. We agree a written analysis plan with you first, then deliver a report, publication-ready figures, result tables and re-runnable code. For research institutes, hospitals and pharma teams.

ISO 9001 / ISO 13485 certified quality systemsNational High-Tech Enterprise (China)Every project reviewed by senior bioinformaticiansRe-runnable code with every delivery
Single-cell UMAP with cell-type labels
Differential expression volcano plot
Pathway enrichment
Figures taken from our public-data sample reports. Open the full reports
Two ways to work with us

Start from data, or start from samples

Analysis only: you already have data

Data from your own lab, another provider or a public repository. Send FASTQ, BAM, count matrices, Seurat/h5ad objects or accession numbers and tell us what you want to compare; you receive a written plan and quote within one working day. No minimum order.

Send data, get a plan

Sequencing + analysis: you provide samples

DNA, RNA, single-cell, spatial, protein and metabolite samples. Sequencing is run in our laboratory and partner sequencing facilities; analysis is done by our bioinformatics team. Sample-to-report projects currently accept samples shipped within mainland China.

Sequencing services
Our core service

Custom analysis, not a fixed template

Standard pipelines are the starting point; the customisation is in the plan, the parameters and the interpretation.

Question first, pipeline second

We start from what you want to show, how samples are grouped and where you plan to publish. If the design cannot support a conclusion, we say so at the planning stage and propose what can be done instead.

A written plan you can check

Analyses, thresholds, deliverables, timeline and price go into a written plan before work starts. At delivery each item is checked against that plan.

Parameters chosen for your data

QC thresholds, clustering resolution, annotation references and statistical models are chosen for your data, and the reasons are written into the report.

Extra figures, statistics and revisions

A single figure or only the analyses a reviewer asked for is fine; the scope of revisions is agreed in the plan.

Sample reports

See what you will receive before you order

All three examples were run on public data. Reports, figures, tables and code can be downloaded and every number can be recomputed. No client data is used.

Bulk RNA-seq differential expression

Bulk RNA-seq differential expression

Public data GEO GSE147507 · human bronchial epithelial cells, SARS-CoV-2 vs mock, n = 3 each

QC, PCA, sample correlation, DESeq2 differential expression, volcano and heatmap, Hallmark enrichment, plus a methods paragraph.

Single-cell RNA-seq: clustering and annotation

Single-cell RNA-seq: clustering and annotation

Public data 10x Genomics PBMC 10k v3 · human peripheral blood mononuclear cells

QC thresholds with reasons, clustering, marker genes, cell-type annotation and proportions, with annotated result tables.

Bacterial genome resequencing: variant calling

Bacterial genome resequencing: variant calling

Public data SRA SRR2584866 · E. coli REL606 long-term evolution experiment clone

Read QC, alignment, coverage, SNP/InDel calling and filtering, functional annotation, with the full re-runnable pipeline.

How it works

Five steps, each one documented

1

Brief

Tell us the data type, sample groups and the question.

Same day
2

Written plan and quote

Scope, deliverables, timeline and price in writing.

Within 1 working day
3

Analysis

Run to plan; parameters and intermediate results are kept.

Typically 5–15 working days
4

Senior review

Methods, results and figures checked item by item.

5

Delivery and Q&A

Report, figures, tables, code and methods text; questions answered.

Turnaround depends on the project and is fixed in the written plan; population studies and multi-omics integration typically take 15–25 working days.

Deliverables

What you receive

  • Analysis report with methods, results and figure legends
  • Result tables in Excel / CSV
  • Publication-ready figures in PDF / SVG / PNG, adjusted to journal style
  • Re-runnable analysis code with parameters
  • A methods paragraph ready to adapt for your manuscript
Quality and data security

How quality is assured

  • Standardised pipelines; every parameter recorded in the report
  • Every project reviewed item by item by senior bioinformaticians before delivery
  • Checked against the written plan before release
  • Data used only for your project; NDA available; deleted or returned after delivery as agreed
Credentials

Verifiable credentials

All items are part of our company history; see the full timeline.

2025
ISO 9001 and ISO 13485 quality management certification
2024
Second prize, 7th China Medical Device Innovation and Entrepreneurship Competition (IVD final)
2023
Joint research translation centre established with The Chinese University of Hong Kong, Shenzhen
2023
HST GENOMICS established in Longgang District, Shenzhen, as a key introduced project
2019
Recognised as a National High-Tech Enterprise
Sequencing and assays

Starting from samples

Sequencing is run in our laboratory and partner sequencing facilities, with analysis by our bioinformatics team. Sample-to-report projects currently accept samples shipped within mainland China.

DNA sequencing

Human WGS and WES, plant and animal de novo genomes, microbial genomes.

Learn more

RNA and single-cell sequencing

mRNA-seq, lncRNA-seq and single-cell RNA-seq.

Learn more

Mass spectrometry

Quantitative proteomics, metabolomics and lipidomics.

Learn more

Pharma R&D support

Biomarker discovery and data analysis support for clinical research samples.

Learn more
FAQ

Before you start

Which data formats do you accept?
FASTQ, BAM, count matrices, h5ad, Seurat objects, Cell Ranger / Space Ranger output, and accession numbers from GEO, SRA, TCGA and similar repositories. Data generated by other providers is welcome.
How is pricing set?
Each project is quoted individually, based on data type, sample number and scope. You receive a written plan and quote within one working day.
Can you do just one step or one figure?
Yes. A single differential analysis, a single figure or only the analyses a reviewer requested are all quoted as projects.
How is data transferred and kept confidential?
Cloud link, shipped drive or direct server transfer. Data is used only for your project, an NDA is available, and data is deleted or returned after delivery as agreed.
Can you work with international clients?
Yes for data analysis: send data from anywhere and we deliver online. Contracts and invoices are arranged in the quote. Sample-to-report sequencing currently accepts samples shipped within mainland China.

Have data, samples or a deadline?

Tell us the data type and the comparison you need. You will receive a written plan and quote within one working day. Or email contact@healthswiftech.com.